Protein subcellular localization prediction of eukaryotes using a knowledge-based approach

BMC Bioinformatics

Table 3 Prediction performance of KnowPred_site, ngLOC, and Blast-hit

*Overall Accuracy*(%)	Methods	Top 1	Top 2	Top 3	Top 4
Single-localized	*KnowPred_site	92.0	95.7	96.8	98.1
	^#KnowPred_site	91.7	95.4	96.6	97.9
	ngLOC	88.8	92.2	94.5	96.3
	Blast-hit	86.0	-	-	-
Multi-localized (at least 1 correct)	*KnowPred_site	90.8	96.4	98.2	98.9
	^#KnowPred_site	90.1	96.1	98.1	98.9
	ngLOC	81.9	92.0	96.1	97.4
	Blast-hit	78.8	-	-	-
Multi-localized (both correct)	*KnowPred_site		74.3	83.3	88.7
	^#KnowPred_site		72.1	82.2	87.5
	ngLOC		59.7	73.8	83.2
	Blast-hit		45.7	-	-

*KnowPredsite represents the experiment result using leave-one-out cross validation; #KnowPredsite represents the experiment result using 10-fold cross validation.

ISSN: 1471-2105