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Table 6 Comparison of performance against the state-of-the-art methods for remote homology detection

From: Efficient use of unlabeled data for protein sequence classification: a comparative study

  PDB Swiss-Prot NR
  ROC ROC50 ROC ROC50 ROC ROC50
triple(1,3), full seq. .9475 .7582 .9245 .6908 .9419 .7327
triple(1,3), region .9708 .8265 .9752 .8556 .9824 .8861
triple(1,3), region, clustering .9716 .8246 .9732 .8605 .9861 .8944
mismatch(5,1), full seq. .9389 .7203 .9253 .6685 .9423 .7233
mismatch(5,1), region .9698 .8048 .9757 .8280 .9837 .8824
mismatch(5,1), region, clustering .9705 .8038 .9773 .8414 .9874 .8885
profile(5,7.5) .9511 .7205 .9709 .7914 .9734 .8151
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