Table 9 Running time for kernel matrix computation (3860 × 3860), [s]
From: Efficient use of unlabeled data for protein sequence classification: a comparative study
Method | mismatch(5,1) | mismatch(5,2) | triple(1,3) |
|---|---|---|---|
full seq. | 12,084 | 13,593 | 153 |
region | 2,624 | 3,195 | 73 |
region+clustering | 2,412 | 2,998 | 64 |