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Table 5 Reactions of the Buchnera metabolic network that involve protons.

From: Deciphering the connectivity structure of biological networks using MixNet

MixNet class 7
substrate(s)   product(s)
proton+cpd-602 cpd-1086
proton+super-oxide hydrogen-peroxide+oxygen-molecule
proton+hydroxy-methyl-butenyl-dip delta(3)-isopentenyl-pp
proton+hydroxy-methyl-butenyl-dip cpd-4211
proton+3-dehydro-shikimate shikimate
proton+2,3-dihydrodipicolinate delta1-piperideine-2-6-dicarboxylate
proton+2-amino-3-oxo-4-phosphonooxybutyrate 1-amino-propan-2-one-3-phosphate+carbon-dioxide
proton+2-aceto-lactate dioh-isovalerate
proton+methylene-thf 5-methyl-thf
proton+l-aspartate-semialdehyde homo-ser
MixNet class 10
substrate(s)   product(s)
erythrose-4p proton+erythronate-4p
2-d-threo-hydroxy-3-carboxy-isocaproate proton+cpd-7100
cpd-296 proton+lipoic-acid
proton+oxygen-molecule proton
sirohydrochlorin+fe+2 proton+siroheme
glc-6-p proton+d-6-p-glucono-delta-lactone