Table 1 Functional assignment criteria
From: The Mycoplasma conjunctivae genome sequencing, annotation and analysis
Source | Known Protein | Putative | Hypothetical |
|---|---|---|---|
Blastp (Mycoplasma DB) | Evalue < e-20 | Evalue between | Evalue |
>e-20 and <e-4 | > e-4 or No match | ||
Blastp (Swissprot DB) | Evalue < e-20 | Evalue between | Evalue |
>e-20 and <e-4 | > e-4 or No match | ||
HAMAP families | Confident protein family match | No confident protein family match | N/A |
Interpro domains | If no HAMAP family match. Support evidence from at least one InterPro member database | Support evidence from one or none Interpro member database | |