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Table 1 Summary parameters used in simulation studies.

From: Functional assessment of time course microarray data

 

Simulated Study A

Simulated Study B

Number of categories

250

250

no. categories with d.e.g.

25

25

Scenarios analised

7 (% d.e.g.'s)

12 (% d.e.g.'s (3) × no.genes categories (4))

% d.e.g.'s within category

20,30,40,50,60,70,80

30,50,70

no. genes in each category

In each scenario, categories have different number of genes, systematicaly taken from 5, 10, 30, 55, 100

In each scenario, all categories have the same number of genes. Different cases: 5,10,50,100

Total number of genes

1000

1250, 2500, 12500, 25000 (250 × no. genes in each category)

  1. d.e.g.'s: differentially expressed genes