Walk-weighted subsequence kernels for protein-protein interaction extraction

BMC Bioinformatics

Table 5 Results on the 5 converted PPI corpora by [18]

Corpus	Positive Examples	negative	All examples	Precision	Recall	F-M
AIMed	1,000	4,834	5,834	61.42	53.26	56.59
BioInfer	2,479	7,174	9,653	61.84	54.24	57.58
HPRD50	163	270	433	66.67	69.23	67.82
IEPA	335	482	817	73.73	71.81	72.88
LLL	164	166	330	76.90	91.15	82.44

Our walk-weighted subsequence kernel was evaluated on 5 PPI corpora. We used the dependency parsed corpora by [18] for dependency information.

ISSN: 1471-2105