Skip to main content

Table 5 Results on the 5 converted PPI corpora by [18]

From: Walk-weighted subsequence kernels for protein-protein interaction extraction

Corpus Positive
Examples
negative All
examples
Precision Recall F-M
AIMed 1,000 4,834 5,834 61.42 53.26 56.59
BioInfer 2,479 7,174 9,653 61.84 54.24 57.58
HPRD50 163 270 433 66.67 69.23 67.82
IEPA 335 482 817 73.73 71.81 72.88
LLL 164 166 330 76.90 91.15 82.44
  1. Our walk-weighted subsequence kernel was evaluated on 5 PPI corpora. We used the dependency parsed corpora by [18] for dependency information.