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Table 2 Time for analysis of chromosome 2 imputed data (220,833 SNPs).

From: ProbABEL package for genome-wide association analysis of imputed data

Model

Option

No. people

CPU time

Linear

-

500

0 m 43 s

  

1000

1 m 23 s

  

1500

2 m 10 s

Linear

--robust

500

0 m 50 s

  

1000

1 m 43 s

  

1500

2 m 35 s

Linear

--mmscore

500

16 m 18 s

  

1000

92 m 45 s

  

1500

231 m 49 s

Logistic

-

500

3 m 20 s

  

1000

6 m 38 s

  

1500

10 m 8 s

Logistic

--robust

500

3 m 25 s

  

1000

6 m 53 s

  

1500

10 m 29 s

Cox PH

-

500

2 m 18 s

  

1000

4 m 30 s

  

1500

6 m 43 s

  1. In all analyzes, 2 covariates were included in the model.
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BMC Bioinformatics

ISSN: 1471-2105

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