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Table 2 Time for analysis of chromosome 2 imputed data (220,833 SNPs).

From: ProbABEL package for genome-wide association analysis of imputed data

Model Option No. people CPU time
Linear - 500 0 m 43 s
   1000 1 m 23 s
   1500 2 m 10 s
Linear --robust 500 0 m 50 s
   1000 1 m 43 s
   1500 2 m 35 s
Linear --mmscore 500 16 m 18 s
   1000 92 m 45 s
   1500 231 m 49 s
Logistic - 500 3 m 20 s
   1000 6 m 38 s
   1500 10 m 8 s
Logistic --robust 500 3 m 25 s
   1000 6 m 53 s
   1500 10 m 29 s
Cox PH - 500 2 m 18 s
   1000 4 m 30 s
   1500 6 m 43 s
  1. In all analyzes, 2 covariates were included in the model.