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Table 4 Identity and dissimilarity scoring matrices for TOPS+ diagrams.

From: An optimized TOPS+ comparison method for enhanced TOPS models

  ISM DSM
SSE E e H h U u E e H h U u
E 0 1 1 1 1 1 0 1 2 2 2 2
e 1 0 1 1 1 1 1 0 2 2 2 2
H 1 1 0 1 1 1 2 2 0 1 2 2
h 1 1 1 0 1 1 2 2 1 0 2 2
U 1 1 1 1 0 1 2 2 2 2 0 1
u 1 1 1 1 1 0 2 2 2 2 1 0
  1. Identity Scoring Matrix (ISM) and Dissimilarity Scoring Matrix (DSM) of secondary structure elements used for matching TOPS+ diagrams.