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Table 4 Identity and dissimilarity scoring matrices for TOPS+ diagrams.

From: An optimized TOPS+ comparison method for enhanced TOPS models

 

ISM

DSM

SSE

E

e

H

h

U

u

E

e

H

h

U

u

E

0

1

1

1

1

1

0

1

2

2

2

2

e

1

0

1

1

1

1

1

0

2

2

2

2

H

1

1

0

1

1

1

2

2

0

1

2

2

h

1

1

1

0

1

1

2

2

1

0

2

2

U

1

1

1

1

0

1

2

2

2

2

0

1

u

1

1

1

1

1

0

2

2

2

2

1

0

  1. Identity Scoring Matrix (ISM) and Dissimilarity Scoring Matrix (DSM) of secondary structure elements used for matching TOPS+ diagrams.
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BMC Bioinformatics

ISSN: 1471-2105

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