Table 5 Normalized similarity score between secondary structure elements.
From: An optimized TOPS+ comparison method for enhanced TOPS models
Absolute Differences | Equations | Description |
|---|---|---|
total incoming arcs | D2 = |t I - s I | | t I and s I are the total number of incoming arcs of the TOPS+ strings elements t i ∈ T and s j ∈ S respectively |
total incoming arcs type_R | D3 = |t IR - s IR | | t IR and s IR indicate the total number of incoming arcs type_R for t i ∈ T and s j ∈ S respectively |
total incoming arcs type_L | D4 = |t IL - s IL | | t IL and s IL indicate the total number of incoming arcs type_L for t i ∈ T and s j ∈ S respectively |
total incoming arcs type_P | D5 = |t IP - s IP | | t IP and s IP indicate the total number of incoming arcs type_P for t i ∈ T and s j ∈ S respectively |
total incoming arcs type_A | D6 = |t IA - s IA | | t IA and s IA indicate the total number of incoming arcs type_A for t i ∈ T and s j ∈ S respectively |
total outgoing arcs | D7 = |t O - s O | | t O and s O are the total number of outgoing arcs for the TOPS+ strings elements t i ∈ T and s j ∈ S respectively |
total outgoing arcs type_R | D8 = |t OR - s OR | | t OR and s OR indicate the total number of outgoing arcs type_R for t i ∈ T and s j ∈ S respectively |
total outgoing arcs type_L | D9 = |t OL - s OL | | t OL and s OL indicate the total number of outgoing arcs type_L for t i ∈ T and s j ∈ S respectively |
total outgoing arcs type_P | D10 = |t OP - s OP | | t OP and s OP indicate the total number of outgoing arcs type_P for t i ∈ T and s j ∈ S respectively |
total outgoing arcs type_A | D11 = |t OA - s OA | | t OA and s OA indicate the total number of outgoing arcs type_A for t i ∈ T and s j ∈ S respectively |
total ligand arcs | D12 = |t L - s L | | t L and s L are the total number of ligand arcs for the TOPS+ strings elements t i ∈ T and s j ∈ S respectively |