Multiconstrained gene clustering based on generalized projections

BMC Bioinformatics

Table 2 26 reference gene clusters from yeast biochemical pathways

Cluster name	Number of genes
TCA cycle, aerobic respiration	24
de novo biosynthesis of purine nucleotides	32
de novo biosynthesis of pyrimidine deoxyribonucleotides	15
de novo biosynthesis of pyrimidine ribonucleotides	12
ergosterol biosynthesis	15
fatty acid biosynthesis, initial steps	12
fatty acid oxidation pathway	11
folate biosynthesis	24
folate interconversions	17
folate polyglutamylation	13
folate transformations	16
gluconeogenesis	17
glycolysis	14
glyoxylate cycle	12
inositol phosphate biosynthesis	14
isoleucine degradation	13
lipid-linked oligosaccharide biosynthesis	15
pantothenate and coenzyme A biosynthesis	11
phenylalanine degradation	12
phosphatidylinositol phosphate biosynthesis	21
protein modifications	12
salvage pathways of adenine, hypoxanthine, and their nucleosides	11
sphingolipid metabolism	23
superpathway of glucose fermentation	14
tryptophan degradation	12
valine degradation	11

ISSN: 1471-2105