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Table 2 26 reference gene clusters from yeast biochemical pathways

From: Multiconstrained gene clustering based on generalized projections

Cluster name Number of genes
TCA cycle, aerobic respiration 24
de novo biosynthesis of purine nucleotides 32
de novo biosynthesis of pyrimidine deoxyribonucleotides 15
de novo biosynthesis of pyrimidine ribonucleotides 12
ergosterol biosynthesis 15
fatty acid biosynthesis, initial steps 12
fatty acid oxidation pathway 11
folate biosynthesis 24
folate interconversions 17
folate polyglutamylation 13
folate transformations 16
gluconeogenesis 17
glycolysis 14
glyoxylate cycle 12
inositol phosphate biosynthesis 14
isoleucine degradation 13
lipid-linked oligosaccharide biosynthesis 15
pantothenate and coenzyme A biosynthesis 11
phenylalanine degradation 12
phosphatidylinositol phosphate biosynthesis 21
protein modifications 12
salvage pathways of adenine, hypoxanthine, and their nucleosides 11
sphingolipid metabolism 23
superpathway of glucose fermentation 14
tryptophan degradation 12
valine degradation 11