Figure 1

Comparison of motifs found in mouse ChIP-seq datasets. The figure shows the motifs reported by Chen et al. [11] and those found by MEME in sequences identified as bound to the given transcription factor in 13 ChIP-seq experiments. The MEME motifs were found using 100 randomly chosen bound sequences and the OOPS- prior. The inter-motif distance (scaled Euclidean distance) is computed as described in Additional file 1.