Figure 8

Pfam Clan Comparison. The graph shows an example of a Pfam clan and the corresponding sub-HMM network. The sub-HMM method clusters Pfam domains by conserved fragments. In the given example, the results from both methods agree very well. The Pfam clan membership is indicated by the large box labeled CL0063. The oval nodes with a PF* label represent domain families for which only one sub-HMM was created. The rectangular boxes labeled with a PF* number represent that domain family and nodes inside are sub-HMMs created from that family.