Predicting conserved protein motifs with Sub-HMMs

BMC Bioinformatics

Table 3 Matches Among DUFs and DKFs.

Match Type	Sub-HMMs	Pfam HMMs	OL PROSITE/Sub-HMM
sub-DKF → DKF	28,794	6,571	689
sub-DKF → DUF	21,615	1,751	502
sub-DUF → DKF	6,798	5,487	0
sub-DUF → DUF	5,070	1,516	0

The table lists the numbers of sub-DKFs and sub-DUFs which matched in addition to their source families other DKF and DUF families. A sub-HMM is considered to have matched a Pfam 22.0 family if it scores greater than 0 on more than 50% of its members. The last column contains the counts of sub-HMMs that also overlapped with PROSITE motifs.

ISSN: 1471-2105