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Table 1 Sum of squared residuals of the fits of model ranks r = 1 ... 4: SSR of all probes and of probes containing C-triples and the (GGG)1-motif are given for the N-model (r = 1).

From: G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration

 

HG133A_S

Mouse

ENCODE

SSR(1)

0.048

0.072

0.11

SSR(1, CCC)

0.072

0.088

0.094

SSR(1, (GGG)1)

0.071

0.21

0.85

F: N → NN

147.52

202.08

381.73

F: NN → NNN

11.11

20.6

78.07

F: NNN → NNNN

3.09

6.16

8.89

  1. The respective F-values for the higher ranks r = 2 - 3 evaluate the improvement of the fits with respect to the model of next smaller rank r - 1.
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BMC Bioinformatics

ISSN: 1471-2105

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