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Table 2 'GeneCluster' concept instances used in IMGT/LIGMotif.

From: From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT® standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences

  

'Molecule_EntityPrototype' concept instance

IMGT-ONTOLOGY "GeneCluster" concept instance

Sequence Ontology

Minimal number of different instances

Name of the different instances

V-CLUSTER

SO:0000526

1

V-GENE

J-CLUSTER

SO:0000513

1

J-GENE

D-CLUSTER

SO:0000559

1

D-GENE

D-J-CLUSTER

SO:0000560

2

D-GENE

   

J-GENE

V-D-CLUSTER

 

2

V-GENE

   

D-GENE

V-J-CLUSTER

SO:0000534

2

V-GENE

   

J-GENE

V-D-J-CLUSTER

SO:0000532

3

V-GENE

   

D-GENE

   

J-GENE

  1. (1) Seven 'GeneCluster' concept instances of IMGT-ONTOLOGY are used in IMGT/LIGMotif. Six of them are also used by Sequence Ontology (SO) [30].
  2. (2) Relations with the 'Molecule_EntityPrototype' concept instances comprise the minimal number of different instances for each 'GeneCluster' concept instance and the name of the different instances, as defined in the IMGT/LIGM-DB list of labels [31].
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BMC Bioinformatics

ISSN: 1471-2105

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