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Figure 7 | BMC Bioinformatics

Figure 7

From: Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand complexes

Figure 7

Binding sites of near-native clusters in complexes of CaM with CNG (top panel) and CaMKK (bottom panel). Binding sites are depicted as van der Walls (VDW) balls. Darker VDW balls indicate the decoy residues interacting more with the ligand. Interaction clusters obtained using IFP are more similar to the native interactions than those obtained using RMSD.

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BMC Bioinformatics

ISSN: 1471-2105

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