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Table 1 Change points and genomic regions studied.

From: TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays

Label

Chr.

Region

Change point

Safety region

PCN1

PCN2

N/G

2

108.0-140.0

124.0

1.00

normal (1,1)

gain (1,2)

G/L

2

125.0-157.0

141.0

1.00

gain (1,2)

copy-neutral LOH (0,2)

N/D

10

80.0-109.0

94.0

1.00

normal (1,1)

deletion (0,1)

D/L

10

106.5-113.5

110.0

1.00

deletion (0,1)

copy-neutral LOH (0,2)

N/N

2

55.0-75.0

60.0

1.00

normal (1,1)

normal (1,1)

  1. Each change point, covered by a 1.00 Mb safety region, separates two unique PCN regions (PCN1 and PCN2). The change points on the same chromosome share parts of the same PCN region. All lengths are in units of mega base pairs (Mb).
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BMC Bioinformatics

ISSN: 1471-2105

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