Table 4 The efficiency of the filter on three different sets of parameters.
Constraints | (A) RNAduplex calls in the naive method | (B) RNAduplex calls by our method | (C)% of saved calls | |||||
|---|---|---|---|---|---|---|---|---|
Seed location | No. of GU pairs | Maximal bulge size | Â | Â | Â | Â | ||
| Â | in seed | total | on miRNA | on mRNA | Maximal no. of errors | Â | Â | Â |
2-8 | 1 | 4 | 6 | 6 | 6 | 1819306 | 1108226 | 39% |
2-8 | 1 | 2 | 6 | 6 | 3 | 1819306 | 140920 | 92% |
2-7 | 0 | 4 | 6 | 6 | 6 | 480099 | 267087 | 45% |