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Table 1 CPU times of Calibur on large data set.

From: Calibur: a tool for clustering large numbers of protein decoys

Threshold

0.5

(27)

1.0

(1966)

1.5

(5531)

2.0

(8560)

3.0

(14397)

4.0

(17915)

5.0

(19905)

Calibur

74 ± 7

506 ± 14

1047 ± 27

1482 ± 42

2369 ± 154

3109 ± 266

3616 ± 290

no filtering

225 ± 11

717 ± 22

1250 ± 35

1629 ± 42

2495 ± 180

3166 ± 233

3501 ± 272

Pairwise

2628 ± 72

2624 ± 69

2651 ± 66

2741 ± 83

3293 ± 205

4014 ± 130

4425 ± 324

  1. Numbers in brackets are the sizes of the largest clusters at the corresponding threshold.
  2. CPU times of (1) Calibur, (2) Calibur with the filtering mechanism disabled ("no filtering"), and (3) pairwise, on a set of 29770 decoys for the TM1112 protein. Shown with ± standard deviation.
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BMC Bioinformatics

ISSN: 1471-2105

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