Skip to main content

Table 2 Comparison in the number of calls between CNstream and PennCNV

From: CNstream: A method for the identification and genotyping of copy number polymorphisms using Illumina microarrays

REGION CNstream PennCNV REGION CNstream PennCNV
chr1:2151995..2236917 11 5 chr2:242633058..242645262 5 13
chr3:65166887..65187636 33 22 chr3:75511365..7553579 7 41
chr6:95118323..95118537 10 5 chr5:32142841..32171356 6 11
chr8:5590045..5591685 48 25 chr8:145064091..145083192 6 23
chr8:15447669..15455979 38 23 chr10:47013328..47173619 45 65
chr10:90934639..90954006 25 12 chr10:135116379..135167074 5 24
chr12:7884583..8017012 21 5 chr10:13522971..135284293 10 24
chr14:85518391..85557882 22 5 chr17:74878104..74905197 9 21
chr16:1192442..1265972 13 7 chr19:48267714..48350666 6 16
chr16:1744358..1781034 28 13 chr19:59423491..59445355 7 34
chr19:681297..717103 11 6 chr19:59994795..60018551 21 38
chr19:20385941..20528316 65 7 chr20:14815422..14856741 5 13
chr20:61323074..61366354 12 5 chr20:35443071..3548526 5 21
chr21:45756756..45788806 10 5 chr21:18981497..19000295 5 12
    chr21:43647907..43659936 6 12
    chr22:21169096..21190977 6 12
    chr22:21223788..21337263 6 12
    chr22:2408234..24235221 21 27
  1. Comparison of the number of CNV calls made by both algorithms in the CNP regions that were detected by both algorithms and that showed the maximum difference in number of calls.