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Table 3 Identified peptides from a mass spectrum (Figure 3C) of nucleoprotein derived from type A (H1N1) influenza strain A/Solomon Islands/03/06

From: FluTyper-an algorithm for automated typing and subtyping of the influenza virus from high resolution mass spectral data

     

Po

   

Sequence

[M+H] +

Start-End

Δppm

Uniqueness (in ppm)

H1N1

H3N2

H5N1

P2009

Protein

Type signature

Subtype sig/ind

NFWR

622.30961

205-208

0.0578

15.9037

1.0000

0.9975

0.9885

1.0000

NP

*

 

MIGGIGR

703.39196

32-38

0.0668

9.2751

0.7249

0.0078

0.0000

0.9877

NP

  

YWAIR

708.38276

385-389

-0.0663

-16.7649

1.0000

0.2902

1.0000

1.0000

NP

*

 

SRYWAIR

951.51590

383-389

1.4419

10.4002

0.8095

0.1878

0.8495

0.0411

NP

  

SGGNTNQQR

961.44460

392-400

0.6313

3.6976

0.8783

0.9724

0.5161

0.0137

NP

*

 

MVLSAFDER

1067.51901

66-74

-0.9958

-6.9338

1.0000

0.9974

1.0000

0.9877

NP

*

 

M*VLSAFDER

1083.51392

66-74

-2.1209

-12.6763

1.0000

0.9974

1.0000

0.9877

NP

  

MVLSAFDERR

1223.62012

66-75

2.0251

5.3252

0.9628

0.9844

0.0000

0.9877

NP

  

FYIQMCTELK

1332.63265

45-54

0.6754

32.3082

0.9865

0.9948

0.9560

1.0000

NP

*

 

SYEQM*ETDGER

1360.53214

9-19

1.6854

8.0895

0.9096

0.3526

0.0000

0.0260

NP

  

M*CSLM*QGSTLPR

1412.63307

163-174

2.5130

-7.6276

1.0000

0.9974

0.9765

1.0000

NP

  
  1. Naïve Bayes probabilities: P(FluA) = 1.000, P(H1N1) = 0.9998; M* indicates methionine sulfoxide