Gene prioritization and clustering by multi-view text mining

BMC Bioinformatics

Table 6 Prioritization of the myopathy disease relevant gene MTM1 by different CVs and multi-view approach

CV	Ranking position	false positive genes	correlated terms
LDDB	1	C3orf1	muscle, heart, skeletal
	2	HDAC4	muscle, heart, calcium, growth
	3	CNTFR	muscle, heart, muscle weak, growth
	4	MTM1	muscle, muscle weak, skeletal, hypotonia, growth, lipid
eVOC	1	MTM1	muscle, sever, disorder, affect, human, recess
MPO	1	HDAC4	muscle, interact, protein, domain, complex
	2	HYAL1	sequence, human, protein, gener
	3	WTAP	protein, human, sequence, specif
	4	FUT3	sequence, alpha, human
	...
	15	MTM1	myopathy, muscle, link, sequence, disease, sever
GO	1	MTM1	muscle, mutate, family, gene, link, seqeuence, sever
MeSH	1	HYAL1	human, protein, clone, sequence
	2	LUC7L2	protein, large, human, function
	3	MTM1	myopathy, muscle, mutate, family, gene, missens
SNOMED	1	S100A8	protein, large, human, function
	2	LUC7L2	protein, large, human, function
	3	LGALS3	human, protein, express, bind
	...
	23	MTM1	muscle, mutate, family, gene, link
OMIM	1	HDAC4	muscle, interact, protein, bind
	2	MAFK	sequence, protein, gene, asthma relat trait
	3	LUC7L2	protein, large, function, sequence
	4	SRP9L1	sequence, protein, length, function
	...
	50	MTM1	muscle, family, gene, link, sequence, disease, sever, weak
Uniprot	1	MTM1	gene, protein, function
KO	1	S100A8	protein, bind, complex, specif, associ, relat
	2	PRF1	specif, protein, contain, activ
	...
	56	MTM1	protein, large, specif, contain
Multi-view	1	MTM1
	2	HDAC4
	3	CNTFR

ISSN: 1471-2105