BMC Bioinformatics

Table 1 Area Under Curve (AUC) values for each model on each data subset, using RMA preprocessing.

From: A comparison of probe-level and probeset models for small-sample gene expression data

	HGU95A			HGU133A		Golden Spike
	4 × 4	3 × 3s	2 × 2s	3 × 3	2 × 2s	3 × 3	2 × 2s
NFM	0.9993	0.9987	0.9922	0.9510	0.9488	0.7611	0.7568
PLM1	0.9982	0.9961	0.9896	0.9447	0.9471	0.8009	0.7977
PLM2	0.9982	0.9961	0.9895	0.9447	0.9470	0.8009	0.7977
LE	0.9985	0.9941	0.9817	0.9597	0.9397	0.7658	0.7600
PL-LM	0.9982	0.9952	0.9864	0.9168	0.9110	0.9619	0.9553
PLW	0.9982	0.9906	0.9854	0.9466	0.9375	0.8208	0.8138
FC	0.9953	0.9891	0.9764	0.9571	0.9403	0.7679	0.7622
RMANOVA1	0.6638	0.5854	0.5320	0.9665	0.9413	0.4142	0.3816
RMANOVA2	0.6935	0.6492	0.5885	0.9713	0.9580	0.4922	0.4577
FIRSTP	0.9753	0.9660	0.9553	0.9409	0.9244	0.7983	0.7746
PUMA	0.9435	0.9276	0.9019	0.9133	0.9143	0.7901	0.7769

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ISSN: 1471-2105

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