Table 3 Prediction rates: A - test set, B - CGH against self-reference (all CNAs), C - normal tissue (all CNVs).
From: A classification model for distinguishing copy number variants from cancer-related alterations
| Â | CBS smoothed | GLAD | CBS unsmoothed | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | A | B | C | A | B | C | A | B | C |
CART-full model | 0.86 | 0.79 | 0.90 | 0.83 | 0.91 | 0.78 | 0.80 | 0.66 | 0.92 |
RF - full model | 0.87 | 0.82 | 0.95 | 0.86 | 0.91 | 0.87 | 0.84 | 0.77 | 0.92 |
CART- database only | 0.85 | 0.88 | 0.81 | 0.83 | 0.89 | 0.80 | 0.72 | 0.34 | 0.99 |
RF - no database | 0.85 | 0.79 | 0.94 | 0.86 | 0.89 | 0.85 | 0.82 | 0.74 | 0.95 |
RF - one array | 0.85 | 0.81 | 0.97 | 0.84 | 0.91 | 0.89 | 0.83 | 0.75 | 0.96 |