Detecting internally symmetric protein structures

BMC Bioinformatics

Table 2 Names of SCOP Folds shown in Fig. 5

SN^a	Scop Id	Zscore >= 8^b	Zscore >= 10^c	Total^d	Fold Name
1	c.1	268	223	322	TIM beta/alpha-barrel
2	a.118	51	45	94	alpha-alpha superhelix
3	b.42	41	39	41	beta-Trefoil
4	b.69	35	35	35	7-bladed beta-propeller
5	a.102	39	33	42	alpha/alpha toroid
6	a.25	34	29	43	Ferritin-like
7	b.80	27	27	29	Single-stranded right-handed beta-helix
8	b.68	27	27	27	6-bladed beta-propeller
9	c.10	24	21	25	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
10	f.4	19	18	20	Transmembrane beta-barrels
11	d.58	58	16	302	Ferredoxin-like
12	a.24	33	16	65	Four-helical up-and-down bundle
13	d.131	20	16	22	DNA clamp
14	d.211	15	14	17	beta-hairpin-alpha-hairpin repeat
15	b.82	13	13	82	Double-stranded beta-helix
16	c.94	18	12	52	Periplasmic binding protein-like II
17	a.2	18	12	40	Long alpha-hairpin
18	b.81	12	12	16	Single-stranded left-handed beta-helix
19	a.7	23	11	40	Spectrin repeat-like
20	c.93	12	11	15	Periplasmic binding protein-like I
21	d.126	12	11	12	Pentein, beta/alpha-propeller
22	d.19	10	10	15	MHC antigen-recognition domain
23	b.67	10	10	10	5-bladed beta-propeller
24	a.26	15	9	28	4-helical cytokines
25	a.47	11	9	11	STAT-like
26	b.50	10	9	15	Acid proteases
27	a.29	14	8	25	Bromodomain-like
28	d.157	12	8	21	Metallo-hydrolase/oxidoreductase
29	a.39	14	6	58	EF Hand-like
30	b.40	10	3	126	OB-fold
31	d.32	10	3	31	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
32	b.1	33	2	369	Immunoglobulin-like beta-sandwich
33	c.2	15	2	193	NAD(P)-binding Rossmann-fold domains

ISSN: 1471-2105