Skip to main content

Table 3 Comparison with other methods

From: Detecting internally symmetric protein structures

      # or % symmetric proteins found
Program name   Dataset   Fold name   
      Others SymD (SCOP 1.73,
ASTRAL 40)
DAVROS [9]   CATH   LRR 89% 84-96%
     TIM barrels 60% 69-83%
     β-trefoils 67% 95-100%
OPAAS [6]   SCOP 1.55   β-propellers 86% 100%
     β-trefoils 72% 95-100%
Swelfe [4]   ASTRAL 50    172 968-1385
RQA [11]   SCOP 1.69   β-propellers 75% 100%
     β-trefoils 86% 95-100%
GANGSTA+[5]   SCOP 1.73,   ferredoxin-like 68 16-58
   ASTRAL 40   immunoglobulin-like 31 2-33
     β-trefoil 23 39-41
     four helical up-and-down bundle 16 16-33
     DNA clamp 14 16-20
     7-bladed b-propellers 13 35
     TIM barrels 12 223-268
     γ-crystalline-like 10 7-9
  1. ¶ Repeat length >50.