Skip to main content

Table 1 Optimized parameter values for trained classifiers.

From: Pripper: prediction of caspase cleavage sites from whole proteomes

Classifier

Parameter

Value

SVM

SVM method

NU-SVC

 

Kernel type

RBF

 

Kernel function parameter γ

2-5.5

 

Error parameter ν

0.536

 

Stopping criterion ε

0.00001

 

Sequence length

10

  

6 before cut site

  

4 after cut site

Random forest

Maximum depth

unlimited

 

Number of features

4

 

Number of trees

143

 

Sequence length

24

  

12 before cut site

  

12 after cut site

J48

Confidence factor

0.285

 

Minimum number of objects

5

 

Number of folds

3

 

Binary splits

true

 

Reduced error pruning

false

 

Subtree raising

true

 

Unpruned

false

 

Use Laplace

false

 

Sequence length

6

  

4 before cut site

  

2 after cut site