From: Pripper: prediction of caspase cleavage sites from whole proteomes
Classifier | Parameter | Value |
---|---|---|
SVM | SVM method | NU-SVC |
Kernel type | RBF | |
Kernel function parameter γ | 2-5.5 | |
Error parameter ν | 0.536 | |
Stopping criterion ε | 0.00001 | |
Sequence length | 10 | |
6 before cut site | ||
4 after cut site | ||
Random forest | Maximum depth | unlimited |
Number of features | 4 | |
Number of trees | 143 | |
Sequence length | 24 | |
12 before cut site | ||
12 after cut site | ||
J48 | Confidence factor | 0.285 |
Minimum number of objects | 5 | |
Number of folds | 3 | |
Binary splits | true | |
Reduced error pruning | false | |
Subtree raising | true | |
Unpruned | false | |
Use Laplace | false | |
Sequence length | 6 | |
4 before cut site | ||
2 after cut site |