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Table 3 Predicted caspase cut sites of the human protein sequences downloaded from UniProtKB database.

From: Pripper: prediction of caspase cleavage sites from whole proteomes

  SVM-6-4 RF-12-12 J48-4-2 Vote
Predicted number of cut proteins 70 343 73104 79 926 66 513
% of all proteins (96 123) 73,2 76,1 83,1 69,2
Average number of cut sites per sequence 4,3 4,8 5,9 3,7
Predicted cut sites total 301 678 348 600 468 865 246 692
% of all possible cut sites (1 749 441) 17,2 19,9 26,8 14,1
  1. The cut sites were predicted with Pripper using Vote classification (RF-12-12 and SVM-6-4). The cut sites were predicted only from positions that had Asp (D) in the cut site; the given number of all possible cut sites is the number of Asp (D) residues in the protein sequences.