Skip to main content

Table 3 Predicted caspase cut sites of the human protein sequences downloaded from UniProtKB database.

From: Pripper: prediction of caspase cleavage sites from whole proteomes

 

SVM-6-4

RF-12-12

J48-4-2

Vote

Predicted number of cut proteins

70 343

73104

79 926

66 513

% of all proteins (96 123)

73,2

76,1

83,1

69,2

Average number of cut sites per sequence

4,3

4,8

5,9

3,7

Predicted cut sites total

301 678

348 600

468 865

246 692

% of all possible cut sites (1 749 441)

17,2

19,9

26,8

14,1

  1. The cut sites were predicted with Pripper using Vote classification (RF-12-12 and SVM-6-4). The cut sites were predicted only from positions that had Asp (D) in the cut site; the given number of all possible cut sites is the number of Asp (D) residues in the protein sequences.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us