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Table 1 Summary of layout results.

From: An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information

Model/Algorithm

URL

Fas-induced apoptosis model/Grid Layout

https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/apoptosisgrid.csml

Fas-induced apoptosis model/Spring

https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/apoptosisspring.csml

Fas-induced apoptosis model/GDC

https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/apoptosisgdc.csml

cell fate simulation model of C. elegans/Grid Layout

https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/elegansgrid.csml

cell fate simulation model of C. elegans/Spring

https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/elegansspring.csml

cell fate simulation model of C. elegans/GDC

https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/elegansgdc.csml

endothelial cell model/Grid Layout

https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/endothelialgrid.csml

endothelial cell model/Spring

https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/endothelialspring.csml

endothelial cell model/GDC

https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/endothelialgdc.csml

  1. The resulting layouts of Grid Layout and Spring for the Fas-induced apoptosis model, cell fate simulation model of C. elegans, and endothelial cell model are available at the following links.
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BMC Bioinformatics

ISSN: 1471-2105

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