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Table 1 Summary of layout results.

From: An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information

Model/Algorithm URL
Fas-induced apoptosis model/Grid Layout https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/apoptosisgrid.csml
Fas-induced apoptosis model/Spring https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/apoptosisspring.csml
Fas-induced apoptosis model/GDC https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/apoptosisgdc.csml
cell fate simulation model of C. elegans/Grid Layout https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/elegansgrid.csml
cell fate simulation model of C. elegans/Spring https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/elegansspring.csml
cell fate simulation model of C. elegans/GDC https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/elegansgdc.csml
endothelial cell model/Grid Layout https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/endothelialgrid.csml
endothelial cell model/Spring https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/endothelialspring.csml
endothelial cell model/GDC https://cionline.hgc.jp/cifileserver/launchCIOPlayer?mode=BP&antialias=on&model=https://www.csml.org/download/model/csml30/gl/endothelialgdc.csml
  1. The resulting layouts of Grid Layout and Spring for the Fas-induced apoptosis model, cell fate simulation model of C. elegans, and endothelial cell model are available at the following links.
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BMC Bioinformatics

ISSN: 1471-2105

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