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Table 4 TOPSI signatures for B. mallei.

From: A high-throughput pipeline for the design of real-time PCR signatures

Chr.

Forward primer

(position)

Probe

(position)

Reverse primer

(position)

Amplicon length

1

ACTGCTGTACCGCGCTCTTT

(2632348)

ATTCGCAGCACCCATTACAACCGTTG (2632376)

GCTGAAGAGTGGCTGCAATG

(2632449)

121

1

GGTCTACAGCTCCGCGAATT

(3187456)

CTCAAACCGTTAGGCGACTCAAGGTGC

(3187488)

ATGGCATGGTGCTGTGAAAC

(3187528)

92

2

CGAGCCATCGACCTCATG (1094082)

ACATGTCGAAGCATTTTTCGCCGC

(1094188)

TCGGCGATCGATGGTCTAG

(1094228)

165

2

CTCCCACGCCGACTGATAC

(1094844)

AAGCTGTTGATCGTGCAACACCAGCAC

(1094883)

CGGTGAAACCTGGATACTGGA

(1094938)

115

  1. The positions and amplicon lengths are with reference to the B. mallei ATCC 23344 genome.