Table 2 De nov o assembly statistics for E. coli
From: SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Assembler | ε no _m | ε mis _m |
|
|
|
| N50 | Genome coverage |
|---|---|---|---|---|---|---|---|---|
| Â | % of total assembly | No. of events/Mbp of assembly | Kbp | % | ||||
S-SOPRA (unpaired) | .2 | .14 | .43 | 2.13 | - | - | .5 | 92.7 |
V-SOPRA (unpaired) | .02 | .03 | .22 | 0 | - | - | 1.5 | 94 |
Velvet (unpaired) | .02 | .2 | .22 | .64 | - | - | 1.5 | 94.3 |
S-SOPRA (paired) | .2 | .15 | .43 | 2.13 | 0.43 | 2.55 | 125.5 | 92.7 |
V-SOPRA (paired) | .02 | .03 | .21 | 0 | 0.43 | 1.7 | 200.6 | 94 |
Velvet (paired) | .06 | .67 | 2.55 | 1.7 | 0.65 | .87 | 2.3 | 94.2 |
