Table 3 Analysis of contigs removed from the scaffolding process
From: SOPRA: Scaffolding algorithm for paired reads via statistical optimization
| Â | E. coli dataset | P. syringae dataset | ||
|---|---|---|---|---|
| Â | V-SOPRA | S-SOPRA | V-SOPRA | S-SOPRA |
Total number of removed contigs | 106 | 338 | 61 | 189 |
Total genomic length of removed contigs (% of total assembly) | 192 kb (4.1%) | 313 kb (6.7%) | 77 kb (1.3%) | 272 kb (4.5%) |
number of problematic contigs | 58 | 128 | 60 | 164 |
Total genomic length of problematic contigs (% of total assembly) | 130 kb (2.8%) | 184 kb (3.9%) | 76 kb (1.2%) | 233 kb (3.8%) |