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Table 2 Contribution of different terms to side chain prediction accuracy

From: Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions

 

Side chain RMSD, Å

 

All

Buried

Exposed

EScSc, EScMc, Erot, Elj

1.47

0.73

1.72

Erot, Elj

1.52

0.77

1.78

EScSc, EScMc

2.28

1.39

2.61

EScSc, Erot

1.87

1.36

2.05

EScSc, Elj

2.04

0.97

2.41

Elj

2.13

1.04

2.51

Erot

2.25

2.05

2.29

  1. The contribution of the different term to Hunter was evaluated by rebuilding side chain conformations on a test set of 94 proteins. The full rotamer library was used with Hunter (see Methods for details).
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BMC Bioinformatics

ISSN: 1471-2105

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