Association analysis for HapMap individuals using simulated case-control data. Each panel shows the log10 p-value of association. Left panel corresponds to a model including only the CNVs, while the right panel shows the results for a model adjusted for population stratification using the first two eigen-vector from a non-supervised multiple correspondence analysis (MCA). The size of the marks is scaled to the p-value. Those CNVs that pass Bonferroni correction are highlight in green color.