BMC Bioinformatics

Table 2 Run times of the RANSAC aligner for aligning the 12 synthetic data sets and the real proteomic (P1 and P2) and metabolomic (M1 and M2) data sets.

From: MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

Data set		Run time (min)
		Run 1	Run 2	Run 3	Average
Synthetic data set 1		0.17	0.15	0.16	0.16
Synthetic data set 2		0.32	0.31	0.31	0.31
Synthetic data set 3		0.44	0.41	0.42	0.42
Synthetic data set 4		0.46	0.45	0.45	0.45
Synthetic data set 5		0.62	0.67	0.74	0.68
Synthetic data set 6		0.39	0.38	0.39	0.39
Synthetic data set 7		0.54	0.54	0.55	0.55
Synthetic data set 8		0.25	0.26	0.25	0.25
Synthetic data set 9		0.79	0.80	0.84	0.81
Synthetic data set 10		0.73	0.73	0.72	0.73
Synthetic data set 11		5.24	4.11	5.17	4.84
Synthetic data set 12		7.79	7.78	7.64	7.74
M1		62.27	58.08	63.56	61.30
M2		147.64	163.62	146.79	152.69
P1	000	4.95	6.49	7.72	6.39
	020	0.50	0.50	0.57	0.52
	040	0.76	0.70	0.65	0.70
	060	1.11	1.06	1.14	1.10
	080	0.61	0.57	0.67	0.62
	100	0.46	0.48	0.51	0.48
P2	000	22.47	22.94	21.12	22.18
	020	1.35	1.31	1.18	1.28
	040	0.65	0.73	0.71	0.70
	080	0.31	0.36	0.39	0.35
	100	0.47	0.43	0.49	0.46

Run times were obtained on an AMD Opteron 1.8 GHz dual-core system with 10 GB RAM, running Linux.

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