Table 5 Some examples of automated sequence refinement

{"CATATTCACCTTTTCAGGCGTTTTGACCGT", "TAMRA", "T"}

<R2>

{"CATATTCACCTTTTCAGGCGTTTTGACCGT"}

{"ATAAC", "TCGAG", "GTGGA", "ATTCA", "TGGCA", "TCTAC", "TTCGT", "ATGAC", "TATTGC", "and", "AAGCT", "TGGTA", "CCTCA", "CTGCA", "GCAGA", "GCGCT", "GAGGC", "CCAGC", "AGCAC"}

<R5, R8, R8>

{"ATAACTCGAGGTGGAATTCATGGCATCTACTTCGTATGACTATTGC"},

{"AAGCTTGGTACCTCACTGCAGCAGAGCGCTGAGGCCCAGCAGCAC"}

{"than", "standard"}

<R4>

-

{"DNA"}

<R1>

-

{"TTCTTTTGGTGGACGATGTG", "and", "GAGGGACGC", "TTGGTAACG", "TAMRA", "and", "TCGCAAGCC", "AAGCAAATAC", "TAMRA", "T", "and", "GAGATAGGGTGCGATGGTTG", "TCGGCGATGACTACGACA"}

<R5, R3, R5, R5, R3, R8, R8, R8>

{"TTCTTTTGGTGGACGATGTG"},

{"GAGGGACGCTTGGTAACG"}, {"TCGCAAGCCAAGCAAATAC"},

{"GAGATAGGGTGCGATGGTTGTCGGCGATGACTACGACA"}

{"RNA", "strand"}

<R7, R1>

-

{":","GCGGCCTGATAAGGGATATTGGAAGC", "R", ":", "GGCGAAATTCATTAAAGAGGATCCTGACAC"}

<R3, R5>

{"GCGGCCTGATAAGGGATATTGGAAGC" }, {"GGCGAAATTCATTAAAGAGGATCCTGACAC" }