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Table 4 Time performances for the steps of the consistency algorithm

From: Automatic detection of anchor points for multiple sequence alignment

Algorithm step RV11 RV12 RV20 RV30 RV40 RV50
MS4 0.83 1.61 18.83 34.08 10.91 13.25
Consistency 0.73 5.22 134.10 160.07 51.76 65.14
  1. Mean values of the time (in s.) taken by the MS4 step and the consistency step for the anchor computation on BAliBASE 3.
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BMC Bioinformatics

ISSN: 1471-2105

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