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Table 8 Table comparing different data formats supported by different databases.

From: Consistency, comprehensiveness, and compatibility of pathway databases

Comparison of Data Formats

Database

Pictorial

Proprietary

API/Data Dump

BioPax

Biopax Format

KEGG

Yes

Yes

Yes

No

NA

Ingenuity

Yes

No

No

No

NA

Wikipathways

Yes

Yes

No

No

NA

Reactome

Yes

Yes

Yes

Yes

Lvl 3

HumanCyc

Yes

Yes

No

Yes

Lvl 2

BioCyc

Yes

No

Yes

Yes

Lvl 3

Pathway Commons

Yes

Yes

Yes

Yes

Lvl 3

  1. We point out that Biopax has since updated its data format three times, known as Level 1, Level 2 and Level 3.