VIGOR, an annotation program for small viral genomes

BMC Bioinformatics

Table 3 Comparison of the annotations in GenBank and predictions by VIGOR, GeneMarkS and ZCURVE_V of two SARS coronavirus genomes, NC_009695 (NC) and AY485277 (AY)

	Annotations in GenBank		Predictions by VIGOR		Predictions by GeneMarkS		Predictions by ZCURVE_V
	start	stop	start	stop	start	stop	start	stop
	261	13394	261	13394	261	13394	261	13394
	13379	21466	13379	21466	*13580*	21466	*13580*	21466
	21473	25198	21473	25198	21473	25198	21473	25198
	25207	26031	25207	26031	25207	26031	25207	26031
	25628	25972	mutation	mutation
	26056	26286	26056	26286			26056	26286
NC	26333	26998	26333	26998	26333	26998	26333	26998
	27009	27200	27009	27200	27009	27200	27009	27200
	27208	27576	27208	27576	27208	27576	27208	27576
	27573	27707	27573	27707			27573	27707
	27714	28082	27714	28082			27714	28082
	28084	29349	28084	29349	28084	29349	28084	29349
	28094	28387	28094	28387
	28544	28756	28544	28756
	265	13413	265	13413	265	13413	265	13413
	265	21485	265	21485	*13599*	21485	*13599*	21485
	21492	25259	21492	25259	21492	25259	21492	25259
	25268	26092	25268	26092	25268	26092	25268	26092
	25689	26153	25689	26153
	26117	26344	26117	26344			26117	26344
AY	26395	27060	26395	27060	26395	27060	26395	27060
			27071	27262	27071	27262	27071	27262
			27270	27638	27270	27638	27270	27638
			27635	27769			27635	27769
			27776	27895			27776	27895
			27861	28115			27861	28115
	28117	29385	28117	29385			28117	29385
			28127	28423	28127	28423
			28580	28792	*28420*	*29385*

Bold coordinates indicate the new, correct predictions. Bold, italic coordinates are incorrect predictions.

ISSN: 1471-2105