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Table 3 Comparison of the annotations in GenBank and predictions by VIGOR, GeneMarkS and ZCURVE_V of two SARS coronavirus genomes, NC_009695 (NC) and AY485277 (AY)

From: VIGOR, an annotation program for small viral genomes

  Annotations in GenBank Predictions by VIGOR Predictions by GeneMarkS Predictions by ZCURVE_V
  start stop start stop start stop start stop
  261 13394 261 13394 261 13394 261 13394
  13379 21466 13379 21466 13580 21466 13580 21466
  21473 25198 21473 25198 21473 25198 21473 25198
  25207 26031 25207 26031 25207 26031 25207 26031
  25628 25972 mutation mutation     
  26056 26286 26056 26286    26056 26286
NC 26333 26998 26333 26998 26333 26998 26333 26998
  27009 27200 27009 27200 27009 27200 27009 27200
  27208 27576 27208 27576 27208 27576 27208 27576
  27573 27707 27573 27707    27573 27707
  27714 28082 27714 28082    27714 28082
  28084 29349 28084 29349 28084 29349 28084 29349
  28094 28387 28094 28387     
  28544 28756 28544 28756     
  265 13413 265 13413 265 13413 265 13413
  265 21485 265 21485 13599 21485 13599 21485
  21492 25259 21492 25259 21492 25259 21492 25259
  25268 26092 25268 26092 25268 26092 25268 26092
  25689 26153 25689 26153     
  26117 26344 26117 26344    26117 26344
AY 26395 27060 26395 27060 26395 27060 26395 27060
    27071 27262 27071 27262 27071 27262
    27270 27638 27270 27638 27270 27638
    27635 27769    27635 27769
    27776 27895    27776 27895
    27861 28115    27861 28115
  28117 29385 28117 29385    28117 29385
    28127 28423 28127 28423   
    28580 28792 28420 29385   
  1. Bold coordinates indicate the new, correct predictions. Bold, italic coordinates are incorrect predictions.