Table 3 Results using contig metrics for bounding read placement algorithm.
| Â | Contig count | Contig N50 | Contig bases | ||||||
|---|---|---|---|---|---|---|---|---|---|
Species | Control | Bounded | Alternate | Control | Bounded | Alternate | Control | Bounded | Alternate |
E. coli O157:H7 | 6 | 5 | NA | 2,315,032 | 4,484,293 | NA | 5,656,811 | 5,661,119 | NA |
S. enterica | 6 | 6 | NA | 3,620,140 | 3,620,144 | NA | 4,813,438 | 4,813,442 | NA |
B. mallei | 19 | 19 | NA | 424,003 | 424,003 | NA | 5,835,215 | 5,834,616 | NA |
I. multifiliis | 4,273 | 4,273 | 5,765 | 12,070 | 12,070 | 11,444 | 37,616,884 | 37,616,884 | 47,976,992 |
E. coli K12 | 313 | 314 | 387 | 27,255 | 27,255 | 16,838 | 4,679,711 | 4,679,711 | 4,441,778 |
C. amycolatum | 26 | 26 | 38 | 307,040 | 307,040 | 152,524 | 2,525,388 | 2,525,392 | 2,507,351 |