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Table 3 The 20 best loci as chosen by the LS module of Panseq from the original 96 loci of Additional File 5.

From: Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

Locus TW14588 Sakai EDL933 EC4501 EC4486 EC4401 EC4206 EC4196 EC4115 EC4113 EC4076 EC4045 EC4042 EC4024 EC869 EC508 EC71074 EC33264 K12 POD
ECs2696 C C G C A A A A A A A A A A A A A A A 63
ECs2775 T G G G G G G G G G G G T G G T G - - 42
ECs2375 C C C C T T T T T T T T T T C C C C C 90
ECs4067 A C A A A A C A A A A A A A A A A A A 34
ECs1262 T T T T C C C C C C C C C C T C C T - 72
ECs1272 T T T T A A A A A A A A A A T A A A - 65
ECs1860 G G G G G G G G G G G G G T G G G G G 18
ECs5359 T T T T T T T T T T T T T T T T T - G 17
ECs3830 C C C C T T T T T T T T T T C C C C C 90
ECs2357 C C C C A A A A A A A A A A C A A C - 72
ECs4022 G G G G A A A A A A A A A A G A A - G 72
ECs0593 T T T T C C C C C C C C T C C C C C C 70
ECs4380 G G G G A A G A A A A A A A A A A A - 65
ECs0606 A A C A C C C C C C C C C C A C C - - 52
ECs2514 T T C T T T T T T T T T T T T T T C C 48
ECs2006 G G C G G G G G G G G G G G G G A - - 31
ECs2852 C T C C C C C C C C C C C C C C C C C 18
ECs4251 G G G G A A A A A A A A A A G G G G G 90
ECs4305 A A A A C C C C C C C C C C C C C C C 60
ECs4479 G G G G T T T T T T T T T T G T T - - 60
  1. Loci are listed in order of choice and with points of discrimination (POD).