Table 3 The 20 best loci as chosen by the LS module of Panseq from the original 96 loci of Additional File 5.
Locus | TW14588 | Sakai | EDL933 | EC4501 | EC4486 | EC4401 | EC4206 | EC4196 | EC4115 | EC4113 | EC4076 | EC4045 | EC4042 | EC4024 | EC869 | EC508 | EC71074 | EC33264 | K12 | POD |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ECs2696 | C | C | G | C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | 63 |
ECs2775 | T | G | G | G | G | G | G | G | G | G | G | G | T | G | G | T | G | - | - | 42 |
ECs2375 | C | C | C | C | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | 90 |
ECs4067 | A | C | A | A | A | A | C | A | A | A | A | A | A | A | A | A | A | A | A | 34 |
ECs1262 | T | T | T | T | C | C | C | C | C | C | C | C | C | C | T | C | C | T | - | 72 |
ECs1272 | T | T | T | T | A | A | A | A | A | A | A | A | A | A | T | A | A | A | - | 65 |
ECs1860 | G | G | G | G | G | G | G | G | G | G | G | G | G | T | G | G | G | G | G | 18 |
ECs5359 | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | - | G | 17 |
ECs3830 | C | C | C | C | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | 90 |
ECs2357 | C | C | C | C | A | A | A | A | A | A | A | A | A | A | C | A | A | C | - | 72 |
ECs4022 | G | G | G | G | A | A | A | A | A | A | A | A | A | A | G | A | A | - | G | 72 |
ECs0593 | T | T | T | T | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | 70 |
ECs4380 | G | G | G | G | A | A | G | A | A | A | A | A | A | A | A | A | A | A | - | 65 |
ECs0606 | A | A | C | A | C | C | C | C | C | C | C | C | C | C | A | C | C | - | - | 52 |
ECs2514 | T | T | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | 48 |
ECs2006 | G | G | C | G | G | G | G | G | G | G | G | G | G | G | G | G | A | - | - | 31 |
ECs2852 | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | 18 |
ECs4251 | G | G | G | G | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | 90 |
ECs4305 | A | A | A | A | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | 60 |
ECs4479 | G | G | G | G | T | T | T | T | T | T | T | T | T | T | G | T | T | - | - | 60 |