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Table 1 Case studies by comparison with other servers/softwares.

From: BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server

PDB1 PDB2 ProFunc SuMo SitesBase PocketMatch PyMol BSSF  
   Score Score Score PI PMScore Min PMScore rmsd FP_Score Z_score
Cases from same SCOP families
1DHJ_MTX 4DFR_MTX 112 100 83.33 0 85.25 85.25 0.231 61.91 -3.87
1A4G_ZMR 1NSC_SIA 112 76 93.67 0 99.91 88.39 0.141 85.58 -2.90
1SDU_MK1 1SDT_MK1 X NA 100 0 98.93 88.39 0.298 40.34 -5.00
1B42_SAH 2VP3_SAH 241 91 76.92 0 99.4 89.29 0.088 77.96 -3.20
1GJC_130 1V2Q_ANH 229 89 29.38 3E-28 93.65 50.17 0.294 194.09 -4.00
1GJC_130 2AYW_ONO 217 40 NA NA 56.9 52.29 1.186 394.22 -1.42
1GJC_130 1O3P_655 X NA 54.80 0 100.0 88.01 0.113 87.31 -2.95
1ADD_1DA 2ADA_HPR 150 45 93.06 0 94.72 83.59 0.149 77.22 -3.21
1KV5_PGA 2JGQ_PO4 104.58 X NA NA 80.48 28.40 3.527 83.63 -2.98
1BZC_TP1 1GFY_12P 174 27 60 2.4E-40 96.87 75.41 0.236 86.52 -2.94
1DJX_13P 1DJY_12P X 58 86.79 2.5E-38 100 69.05 0.160 61.35 -4.16
1AJ6_NOV 1EI1_ANP 102 X 55.55 7.6E009 91.53 21.16 3.019 214.00 -1.78
Cases from different SCOP families
1ECM_TSA 4CSM_TSA X X 54.65 8.6E-27 74.22 55.56 0.640 84.86 -3.02
1M6Z_HEC 1LGA_HEM X X X X 67.58 63.85 5.875 149.16 -0.66
1ZID_ZID 2CIG_1DG X X X X 58.94 56.01 5.691 176.40 0.27
1V07_HEM 1HB1_HEM X X 46.81 2.6E-16 68.94 61.42 0.690 144.04 -0.92