Table 1 Case studies by comparison with other servers/softwares.
From: BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server
PDB1 | PDB2 | ProFunc | SuMo | SitesBase | PocketMatch | PyMol | BSSF | Â | ||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Score | Score | Score | PI | PMScore Min | PMScore | rmsd | FP_Score | Z_score |
Cases from same SCOP families | ||||||||||
1DHJ_MTX | 4DFR_MTX | 112 | 100 | 83.33 | 0 | 85.25 | 85.25 | 0.231 | 61.91 | -3.87 |
1A4G_ZMR | 1NSC_SIA | 112 | 76 | 93.67 | 0 | 99.91 | 88.39 | 0.141 | 85.58 | -2.90 |
1SDU_MK1 | 1SDT_MK1 | X | NA | 100 | 0 | 98.93 | 88.39 | 0.298 | 40.34 | -5.00 |
1B42_SAH | 2VP3_SAH | 241 | 91 | 76.92 | 0 | 99.4 | 89.29 | 0.088 | 77.96 | -3.20 |
1GJC_130 | 1V2Q_ANH | 229 | 89 | 29.38 | 3E-28 | 93.65 | 50.17 | 0.294 | 194.09 | -4.00 |
1GJC_130 | 2AYW_ONO | 217 | 40 | NA | NA | 56.9 | 52.29 | 1.186 | 394.22 | -1.42 |
1GJC_130 | 1O3P_655 | X | NA | 54.80 | 0 | 100.0 | 88.01 | 0.113 | 87.31 | -2.95 |
1ADD_1DA | 2ADA_HPR | 150 | 45 | 93.06 | 0 | 94.72 | 83.59 | 0.149 | 77.22 | -3.21 |
1KV5_PGA | 2JGQ_PO4 | 104.58 | X | NA | NA | 80.48 | 28.40 | 3.527 | 83.63 | -2.98 |
1BZC_TP1 | 1GFY_12P | 174 | 27 | 60 | 2.4E-40 | 96.87 | 75.41 | 0.236 | 86.52 | -2.94 |
1DJX_13P | 1DJY_12P | X | 58 | 86.79 | 2.5E-38 | 100 | 69.05 | 0.160 | 61.35 | -4.16 |
1AJ6_NOV | 1EI1_ANP | 102 | X | 55.55 | 7.6E009 | 91.53 | 21.16 | 3.019 | 214.00 | -1.78 |
Cases from different SCOP families | ||||||||||
1ECM_TSA | 4CSM_TSA | X | X | 54.65 | 8.6E-27 | 74.22 | 55.56 | 0.640 | 84.86 | -3.02 |
1M6Z_HEC | 1LGA_HEM | X | X | X | X | 67.58 | 63.85 | 5.875 | 149.16 | -0.66 |
1ZID_ZID | 2CIG_1DG | X | X | X | X | 58.94 | 56.01 | 5.691 | 176.40 | 0.27 |
1V07_HEM | 1HB1_HEM | X | X | 46.81 | 2.6E-16 | 68.94 | 61.42 | 0.690 | 144.04 | -0.92 |