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Table 1 Comparison of CO with MolLoc.

From: A global optimization algorithm for protein surface alignment

   CO MolLoc
Rank Protein Pair N. corresp atoms RMSD SAS N. corresp atoms RMSD SAS
1 atpE-1hck 62 1.2 1.94 45 1.3 2.89
2 1atpE-1phk 57 0.91 1.6 63 0.9 1.43
3 1atpE-1csn 50 1.18 2.36 55 0.9 1.64
4 1atpE-1nsf 34 2.11 6.21 11 1.4 12.73
5 1atpE-1j7k 25 1.81 7.24 25 1.6 6.4
6 1atpE-1e8xA 24 1.74 7.25 20 1.7 8.5
7 1atpE-1f9aC 21 2.17 10.33 18 1.6 8.89
8 1atpE-1kay 20 1.9 9.5 8 1.7 21.25
9 1atpE-1yag 20 1.92 9.6 17 1.6 9.41
10 1atpE-1a82 19 2.02 10.63 13 1.9 14.62
11 1atpE-1jjv 18 1.76 9.78 10 1.8 18
12 1atpE-1gn8A 17 2.37 13.94 14 1.6 11.43
13 1atpE-1b8aA 16 2.05 12.81 10 2 20
14 1atpE-1mjhA 16 2.28 14.25 14 1.9 13.57
15 1atpE-1e2q 15 1.39 9.27 5 1.8 36
16 1atpE-1kp2A 13 1.51 11.62 15 1.9 12.67
17 1atpE-1ayl 12 1.21 10.08 16 2 12.5
18 1atpE-1g5t 7 2.26 32.29 8 1.6 20
    avg.SAS 10.04   avg.SAS 12.88
  1. Pairwise comparisons of the binding site of protein 1atp with other 18 proteins all binding ATP (columns 2). The results of CO (columns 3-5) and MolLoc (columns 6-8). For a de_nition of SAS see the text. The comparisons are ranked based on the number of corresponding atoms in CO (column 3).