Table 1 Construction of the test regions for the case studies
From: Non-coding RNA detection methods combined to improve usability, reproducibility and precision
| Â | Escherichia coli str. K-12 substr. MG1655 | Listeria monocytogenes EGD-e | Streptococcus pyogenes MGAS5005 |
|---|---|---|---|
regions size | 222873 bp | 284982 bp | 212215 bp |
known ncRNA | 151 consisting of 11900 bp (5.3%) | 101 consisting of 19440 bp (6.8%) [36] | 73 consisting of 14625 bp (6.9%) [34] |
intergenic background | 32754 bp (14.7%) | 37317 bp (13.1%) | 37067 bp (17.5%) |
protein genes | 180505 bp (81.0%) | 231107 bp (81.1%) | 163416 bp (77,0%) |