Figure 8
From: A systematic study of genome context methods: calibration, normalization and combination
ROC curves on the sm-enzyme gold standard set for ECK12 for selected genome context methods: the best two gene neighbor methods, gn-pval and gn-lnX.znorm, and its unnormalized version gn-lnX, the best phylogenetic profile method after normalization, pp-mutual-info.znorm, and its unnormalized version, pp-mutual-info, the gene-fusion method, gf, and the gene cluster method, gc. Normalized version are shown in dashed lines with the same color as the corresponding unnormalized method. Parameters E = 10-4 and Q = 50 and a reference list of size 343 obtained by clustering are used to generate these scores.