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Table 2 Synonymous and non-synonymous analysis of mutations in the heterogeneity sites

From: GenHtr: a tool for comparative assessment of genetic heterogeneity in microbial genomes generated by massive short-read sequencing

Chrom Position Types of Mutations Genotype at SRX007711 Genotype at FPR3757 Alignment with Orthologous Proteins Gene and Function
     gi 87161249 ref 423 EKDATIEKSNTG  
       E DATIEKSNTG  
       ENDATIEKSNTG  
     SRR022865_26088 1 gaggaagataag  
778416 NONSYN T:6 G:140 G:37    aaacctaacacg  
       attattgaacat sulfatase family protein lipoate-protein ligase A family protein
1021087     Query: 36 VKLAMEEYVLKN 1   
  NONSYN T:5 G:151 G:37 + LAMEEYVLKN    
     Sbjct: 14 LNLAMEEYVLKN 25   
     gi 87162345 ref 143 AGIGRYLLNRVD  
       AGIGRYLLNR+D  
       AGIGRYLLNRLD  
     SRR022865_32431 -37 Ggagattcaatg lantibiotic epidermin biosynthesis protein EpiC
       Cgtggattagta  
1950547 NONSYN A:5 C:164 C:37    Tgagatgataat  
     gi 87160275 ref 122 NCLPVYKILLEK  
       NCLPVYKILL+K  
       NCLPVYKILLKK  
     SRR022865_59666 -36 attcgtaattaa Lactose phosphotransferase system repressor phosphotransferase system, glucose-specific IIABC component
       agtctaatttaa  
2333470 NONSYN T:5 C:164 C:37    ttgggtatgaaa  
     Query: 36 LV*IAPWLKNDI 1   
     LV IAPWLKNDI    
2674216 TRUNC A:5 C:170 C:37 Sbjct: 41 LVEIAPWLKNDI 52   
     gi 87161394 ref 71 KKVLLTGLGIVI  
       KK+LLTGLGIVI  
       KKLLLTGLGIVI  
     SRR022865_30969 1 aatctagtgaga  
2648343 NONSYN A:5 C:192 C:37    aatttcgtgttt drug transporter
       aaatagagaaac  
     gi 87160343 ref 120 EVQSKEMLIISI  
       EVQSKEMLI+SI  
       EVQSKEMLIVSI  
     SRR022865_47009 2 ggctagatagaa  
2262790 NONSYN A:153 G:6 A:37    atacaattttgt cation efflux family protein
       ataaaagacttt  
     gi 87160156 ref 825 SDSDSDSDSDSD  
       SDSDSDSDSDSD  
       SDSDSDSDSDSD  
     SRR022865_28556 -37 agtgtgagtgtg  
861340 SYN A:9 C:136 C:49    gacacagacaca clumping factor A
       ctatatctatac  
     gi 87160605 ref 4 FTQLSDRIKKAI  
       FTQLSDRIKK I  
       FTQLSDRIKKDI  
     SRR022865_49291 -36 tactagaaaaga  
1542366 NONSYN A:14 G:85 G:37    tcatgagtaaat hypothetical protein
       ttagttacaacc  
     gi 87160966 ref 476 RNDMVEFFGEKL 5-
       RN+MVEFFGEKL  
       RNEMVEFFGEKL Methyltetrahydropteroyltriglut amate--homocysteine S- Methyltransferase
     SRR022865_53088 1 cagaggttggat  
       gaattattgaat  
408863 NONSYN T:6 G:160 G:37    ttagtaccaaaa  
     gi 87161941 ref 177 VDVLDVYSDAY  
       VD+LDVYSDAY  
       VDLLDVYSDAY  
     SRR022865_54601 3 ggttggttggt  
1180638 NONSYN T:5 G:97 G:37    tattatacaca cell division protein ftsA
       ttaattcttat  
     gi 87160920 ref 104 KGDIIGYVEAMK  
       KGDIIGYVEA+K  
       KGDIIGYVEAIK  
     SRR022865_82913 -37 aggaagtgggaa acetyl-CoA carboxylase, biotin carboxyl carrier protein
       agattgatacta  
1714319 NONSYN T:6 C:95 C:37    gattaattagaa  
     gi 87162179 ref 415 AKSEVWRQMMSD  
       AKSEVWRQM+SD  
       AKSEVWRQMISD  
     SRR022865_51952 -36 gaaggtccaatg  
       cagatggattca  
2638027 NONSYN A:5 C:112 C:36    gataagtagtat gluconate kinase
     gi 87161981 ref 47 DIAVVDIMMDGM  
       DIAVVDIMMD M  
       DIAVVDIMMDVM  
     SRR022865_55616 -36 gaggggaaagga  
       atcttatttatt  
2481059 NONSYN T:5 G:148 G:37    ttagattggttg response regulator protein
     gi 87161886 ref 196 KSENIEKTVNRF  
       K ENIEKTVNRF  
       KIENIEKTVNRF  
     SRR022865_56405 1 aagaagaagact  
       ataataactagt thiamine-phosphate pyrophosphorylase
2212436 NONSYN A:5 C:107 C:37    atattagtttac  
     gi 87161325 ref 64 PVVKELKKHAK  
       P VKELKKHAK  
       PFVKELKKHAK  
     SRR022865_71442 3 ctgagtaacga  
       cttaataaaca  
1252956 NONSYN T:9 G:125 G:37    ttaaagaataa DNA topoisomerase I
     gi 87162241 ref 319 SMDNVVTVGSTD  
       SM NVVTVGSTD  
       SMYNVVTVGSTD lantibiotic epidermin leader
     SRR022865_97728 2 tataggaggtag  
1948255 NONSYN A:5 C:169 C:37    ctaattctgcca peptide processing serine
       tgctctaaatat protease EpiP
1309034 TRUNC C:115 G:5 C:37 Query: 35 ASAGKKSSI*N 3 b   DNA mismatch repair protein MutS
     Sbjct: 754 ASAGKKSSISN 764   
     gi 87161934 ref 619 QQANVELSPTSD  
       Q+ANVELSPTSD  
       QKANVELSPTSD  
     SRR022865_10478 2 cagaggtacatg  
950365 NONSYN A:5 C:113 C:37    aacatatgccca  
       ggttcgataaat exonuclease RexB
     Query: 1 FK*YFKQFEENY 36   
     FK YFKQFEENY    
     Sbjct: 223 FKSYFKQFEENY 234   
2512836 TRUNC C:7 G:115 G:37     sensor histidine kinase
     Query: 3 Q*IINDEVDIG 35   
     Q IINDEVDIG    LysR family transcriptional regulator
2678195 TRUNC A:5 G:92 G:37 Sbjct: 137 QQIINDEVDIG 147   
  1. Note. TRUNC: truncated protein; NONSYN: non-synonymous mutation and SYN: synonymous mutation. a: align with Genewisedb and b: align with Blastx.