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Table 1 The statistics of the designed CTPP primers showing how many primers satisfied the common constraints for SNPs of the SLC6A4 gene*

From: Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm

      

Constraints

    

ID

 

primer

length difference

GC%

GC clamp

T m

T m difference

product length

dimer

hairpin

specificity

1

Results

649/864

1107/1152

645/1152

998/1152

204/864

615/864

2752/2880

990/1152

1117/1152

2

 

684/864

1115/1152

653/1152

1103/1152

512/864

608/864

2760/2880

969/1152

1121/1152

  1. * The results of ID 1 and ID2 are the parameter settings based on DeJong and Spears but ID2 is modified with an increased population size to 1000.