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Table 3 Definition of the series of measurements used to evaluate the performances of the geneset differential expression analysis methods

From: Functional Analysis: Evaluation of Response Intensities - Tailoring ANOVA for Lists of Expression Subsets

  Difference of expression Correlation Diff. Expressed Over-Expressed Under-Expressed Design
Set 1 0.75 0.6 20 20 0 Unidirectional
Set 2 0.75 0 20 20 0 Unidirectional
Set 3 0 0 0 0 0 H0
Set 4 0.75 0.6 10 10 0 Unidirectional
Set 5 0.75 0 10 10 0 Unidirectional
Set 6 1 0.6 20 10 10 Bidirectional
Set 7 1 0 20 10 10 Bidirectional
Set 8 1 0.6 10 5 5 Bidirectional
Set 9 1 0 10 5 5 Bidirectional