Table 3 Definition of the series of measurements used to evaluate the performances of the geneset differential expression analysis methods
Difference of expression | Correlation | Diff. Expressed | Over-Expressed | Under-Expressed | Design | |
|---|---|---|---|---|---|---|
Set 1 | 0.75 | 0.6 | 20 | 20 | 0 | Unidirectional |
Set 2 | 0.75 | 0 | 20 | 20 | 0 | Unidirectional |
Set 3 | 0 | 0 | 0 | 0 | 0 | H0 |
Set 4 | 0.75 | 0.6 | 10 | 10 | 0 | Unidirectional |
Set 5 | 0.75 | 0 | 10 | 10 | 0 | Unidirectional |
Set 6 | 1 | 0.6 | 20 | 10 | 10 | Bidirectional |
Set 7 | 1 | 0 | 20 | 10 | 10 | Bidirectional |
Set 8 | 1 | 0.6 | 10 | 5 | 5 | Bidirectional |
Set 9 | 1 | 0 | 10 | 5 | 5 | Bidirectional |