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Table 7 List of the genesets of the C2.KEGG category detected with a highly significant threshold (0.01) by the other methods

From: Functional Analysis: Evaluation of Response Intensities - Tailoring ANOVA for Lists of Expression Subsets

  Faeri.
fixed.null
Faeri.
fixed.perms
GSA.
mean
GSA.
absmean
GSA.
maxmean
Globaltest.
symptoti
Globaltest.
gamma
Globaltest.
permutations
Gsea.
pval
Gsea.
fdr
Samgs.
pval
Samgs.
qval
Hsa00010_glycolysis_and_neoglucogenesis 0.64 1.8E-03 0.96 0.95 0.98 0.020 7.8E-03 0.1 0.11 0.17 0.1 0.08
Hsa00030_pentose_phosphate_pathway 0.41 8.4E-03 0.95 0.9 0.97 0.024 8.8E-03 0.1 0.23 0.28 0.1 0.08
Hsa00052_galactose_metabolism 0.73 0.08 0.95 0.77 0.97 0.018 8.3E-03 0.1 0.11 0.13 0.1 0.08
Hsa00053_ascorbate_and_aldarate_metabolism 0.97 0.18 0.0E+00 0.72 0.06 0.16 0.16 0.3 0.11 0.42 0.19 0.08
Hsa00071_fatty_acid_metabolism 0.71 0.15 0.0E+00 0.52 0.045 0.2 0.18 0.5 0.11 0.3 0.49 0.08
Hsa00100_biosynthesis_of_steriods 0.94 4.0E-04 0.15 0.75 0.0E+00 0.14 0.1 0.3 0.11 0.32 0.1 0.08
Hsa00272_cysteine_metabolism 0.94 0.25 0.34 0.62 0.1 0.028 6.7E-03 0.1 0.21 0.46 0.19 0.08
Hsa00340_histidine_metabolism 1 0.17 0.0E+00 0.36 0.11 0.35 0.41 0.5 0.11 0.21 0.59 0.9
Hsa00500_starch_and_sucrose_metabolism 1 0.08 0.95 0.6 0.97 0.020 6.7E-03 0.1 0.11 0.18 0.1 0.08
Hsa00512_o_glycan_biosynthesis 0.2 0.22 0.0E+00 0.44 0.0E+00 0.36 0.42 0.5 0.64 0.71 0.1 0.08
Hsa00521_streptomycin_biosynthesis 0.94 0.1 0.95 0.96 0.97 0.016 8.7E-03 0.1 0.11 0.17 0.1 0.08
Hsa00640_propanoate_metabolism 0.92 0.06 0.15 0.6 0.0E+00 0.1 0.07 0.3 0.11 0.31 0.19 0.08
Hsa00720_reductive_carboxylate_pathway 1 0.031 0.1 0.75 0.0E+00 0.7 0.034 0.1 0.11 0.3 0.1 0.08
Hsa04664_fc_epsilon_ri_signaling_pathway 0.97 0.039 0.91 0.55 0.97 0.032 6.9E-03 0.1 0.11 0.25 0.1 0.08
Hsa0521_renal_cell_carcinoma 7.1E-03 0.017 0.91 0.55 0.97 0.036 9.9E-03 0.1 0.12 0.24 0.1 0.08
  1. For each geneset, the p-values are given for each method we used.